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  "License": "GPL (>= 3)",
  "Title": "Simulation-Based Maximum Likelihood Parameter Estimation",
  "Authors@R": "c(\nperson('Paul', 'Staab', role=c('aut')),\nperson('Lisha', 'Mathew', role=c('aut')),\nperson('Dirk', 'Metzler', ,'metzler@bio.lmu.de', role=c('aut', 'ths', 'cre')) )",
  "Author": "Paul Staab [aut], Lisha Mathew [aut], Dirk Metzler [aut, ths,\ncre]",
  "Description": "An estimation method that can use computer simulations to\napproximate maximum-likelihood estimates even when the\nlikelihood function can not be evaluated directly. It can be\napplied whenever it is feasible to conduct many simulations,\nbut works best when the data is approximately Poisson\ndistributed. It was originally designed for demographic\ninference in evolutionary biology (Naduvilezhath et al., 2011\n<doi:10.1111/j.1365-294X.2011.05131.x>, Mathew et al., 2013\n<doi:10.1002/ece3.722>). It has optional support for conducting\ncoalescent simulation using the 'coala' package.",
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  "Date/Publication": "2024-01-02 14:21:22 UTC",
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    },
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    },
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      "date": "2016-05-13"
    },
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      "date": "2019-07-10"
    },
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      "date": "2022-02-15"
    },
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      "date": "2023-03-12"
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    "coarsen_jsfs",
    "create_jaatha_data",
    "create_jaatha_model",
    "create_jaatha_model.coalmodel",
    "create_jaatha_model.function",
    "create_jaatha_stat",
    "estimate_llh",
    "jaatha"
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      "title": "Parametric Bootstrapping of Jaatha Estimates",
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        "boot_jaatha"
      ]
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      "title": "Divides the joint site frequency spectrum (jsfs) into blocks and returns the sum of the jsfs entries for each block.",
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        "coarsen_jsfs"
      ]
    },
    {
      "page": "create_jaatha_data",
      "title": "Prepare the observed data for Jaatha",
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        "create_jaatha_data",
        "create_jaatha_data.default"
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      "page": "create_jaatha_model",
      "title": "Specify a Model for a Jaatha Analysis",
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        "create_jaatha_model"
      ]
    },
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      "page": "create_jaatha_model.coalmodel",
      "title": "Use a coala model in Jaatha",
      "topics": [
        "create_jaatha_model.coalmodel"
      ]
    },
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      "page": "create_jaatha_model.function",
      "title": "Specify a jaatha model using a simulation function",
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        "create_jaatha_model.function"
      ]
    },
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      "page": "create_jaatha_stat",
      "title": "Create a summary statistic for Jaatha",
      "topics": [
        "create_jaatha_stat"
      ]
    },
    {
      "page": "estimate_llh",
      "title": "Estimate the Log-Likelihood for a given parameter combination",
      "topics": [
        "estimate_llh"
      ]
    },
    {
      "page": "jaatha",
      "title": "Simulation based maximum likelihood estimation",
      "topics": [
        "jaatha"
      ]
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    "R6"
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      "author": "Paul Staab",
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        "Creating a model",
        "Preparing the Data",
        "Running Jaatha"
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      "filename": "jaatha-evolution.html",
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